Gm36640 Gene Detail

Summary

• Symbol
  Gm36640
• Name
  predicted gene, 36640
• Synonyms
  Gm44276

• Feature Type
  lncRNA gene
• IDs
  MGI:5595799
  NCBI Gene: 102640621
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:135256550-135290997 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1057 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595799	lncRNA gene	Chr6:135256550-135330448 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004377	antisense lncRNA gene	Chr6:139634592-139691473 (+)
A/J	MGP_AJ_G0004354	antisense lncRNA gene	Chr6:134112940-134164994 (+)
AKR/J	MGP_AKRJ_G0004336	antisense lncRNA gene	Chr6:138197009-138251454 (+)
BALB/cJ	MGP_BALBcJ_G0004340	antisense lncRNA gene	Chr6:133954333-134007332 (+)
C3H/HeJ	MGP_C3HHeJ_G0004289	antisense lncRNA gene	Chr6:138236840-138291704 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004490	antisense lncRNA gene	Chr6:143432559-143486407 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003950	antisense lncRNA gene	Chr6:133272923-133326181 (+)
CAST/EiJ	MGP_CASTEiJ_G0004249	antisense lncRNA gene	Chr6:137679553-137740079 (+)
CBA/J	MGP_CBAJ_G0004283	antisense lncRNA gene	Chr6:148763614-148824535 (+)
DBA/2J	MGP_DBA2J_G0004298	antisense lncRNA gene	Chr6:132968036-133021813 (+)
FVB/NJ	MGP_FVBNJ_G0004315	antisense lncRNA gene	Chr6:131888269-131940516 (+)
LP/J	MGP_LPJ_G0004377	antisense lncRNA gene	Chr6:139717435-139771890 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004306	antisense lncRNA gene	Chr6:152780446-152836222 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004487	antisense lncRNA gene	Chr6:137964101-138017889 (+)
PWK/PhJ	MGP_PWKPhJ_G0004202	antisense lncRNA gene	Chr6:131472198-131526688 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004144	antisense lncRNA gene	Chr6:136130928-136188762 (+)
WSB/EiJ	MGP_WSBEiJ_G0004288	antisense lncRNA gene	Chr6:138586441-138643767 (+)

Homology

• Gene Tree
  Gm36640
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000108276 (Evidence)
• NCBI Gene
  102640621

Representative Sequences			Length	Strain/Species
genomic	102640621	NCBI Gene Model | MGI Sequence Detail	34448	C57BL/6J
transcript	BC072574	GenBank | ENA | DDBJ | MGI Sequence Detail	5965	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5690668

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm36640:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59290	Chr6:135256652-135256668 (+)	110 bp