Gm36945 Gene Detail

Summary

• Symbol
  Gm36945
• Name
  predicted gene, 36945

• Feature Type
  lncRNA gene
• IDs
  MGI:5610173
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:164532988-164540110 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  315 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610173	lncRNA gene	Chr1:164532988-164540110 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005024	lincRNA gene	Chr1:170155383-170162209 (-)
A/J	MGP_AJ_G0005006	lincRNA gene	Chr1:163213021-163219862 (-)
AKR/J	MGP_AKRJ_G0004984	lincRNA gene	Chr1:168166519-168172670 (-)
BALB/cJ	MGP_BALBcJ_G0004988	lincRNA gene	Chr1:163713409-163720872 (-)
C3H/HeJ	MGP_C3HHeJ_G0004936	lincRNA gene	Chr1:168355828-168367896 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005138	lincRNA gene	Chr1:175852136-175859258 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004549	lincRNA gene	Chr1:155169947-155176173 (-)
CAST/EiJ	MGP_CASTEiJ_G0004884	lincRNA gene	Chr1:168001555-168014605 (-)
CBA/J	MGP_CBAJ_G0004927	lincRNA gene	Chr1:182125855-182134729 (-)
DBA/2J	MGP_DBA2J_G0004946	lincRNA gene	Chr1:162103122-162110222 (-)
FVB/NJ	MGP_FVBNJ_G0004967	lincRNA gene	Chr1:160568821-160577649 (-)
LP/J	MGP_LPJ_G0005024	lincRNA gene	Chr1:171252166-171259024 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004951	lincRNA gene	Chr1:189630758-189639011 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005143	lincRNA gene	Chr1:168004044-168012145 (-)
PWK/PhJ	MGP_PWKPhJ_G0004835	lincRNA gene	Chr1:161289643-161305859 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004762	lincRNA gene	Chr1:166872087-166878586 (-)
WSB/EiJ	MGP_WSBEiJ_G0004930	lincRNA gene	Chr1:168160346-168166478 (-)

Homology

• Gene Tree
  Gm36945
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm36945
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000102163 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102163	Ensembl Gene Model | MGI Sequence Detail	7123	C57BL/6J
transcript	ENSMUST00000192040	Ensembl | MGI Sequence Detail	864	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;