Rncr4 Gene Detail

Summary

• Symbol
  Rncr4
• Name
  retina expressed non-coding RNA 4
• Synonyms
  Gm37046

• Feature Type
  lncRNA gene
• IDs
  MGI:5610274
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:30172892-30175125 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610274	lncRNA gene	Chr6:30172892-30175125 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001878	unclassified gene	Chr6:28026074-28028295 (+)
A/J	MGP_AJ_G0001855	unclassified gene	Chr6:26827889-26830110 (+)
AKR/J	MGP_AKRJ_G0001842	unclassified gene	Chr6:27712914-27715135 (+)
BALB/cJ	MGP_BALBcJ_G0001852	unclassified gene	Chr6:26985420-26987641 (+)
C3H/HeJ	MGP_C3HHeJ_G0001829	unclassified gene	Chr6:27715097-27717318 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001973	unclassified gene	Chr6:28836253-28838473 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001631	unclassified gene	Chr6:25036272-25038494 (+)
CAST/EiJ	MGP_CASTEiJ_G0001798	unclassified gene	Chr6:27526888-27529109 (+)
CBA/J	MGP_CBAJ_G0001822	unclassified gene	Chr6:29911444-29913665 (+)
DBA/2J	MGP_DBA2J_G0001826	unclassified gene	Chr6:26766028-26768249 (+)
FVB/NJ	MGP_FVBNJ_G0001834	unclassified gene	Chr6:26526738-26528959 (+)
LP/J	MGP_LPJ_G0001881	unclassified gene	Chr6:28161455-28163676 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001813	unclassified gene	Chr6:32387080-32389301 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001963	unclassified gene	Chr6:27601301-27603522 (+)
PWK/PhJ	MGP_PWKPhJ_G0001759	unclassified gene	Chr6:26327143-26329364 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001724	unclassified gene	Chr6:27335196-27337415 (+)
WSB/EiJ	MGP_WSBEiJ_G0001822	unclassified gene	Chr6:27571768-27573988 (+)

Homology

• Gene Tree
  Rncr4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Assay Results
  727
• Tissues
  21
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103108 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103108	Ensembl Gene Model | MGI Sequence Detail	2234	C57BL/6J
transcript	ENSMUST00000194541	Ensembl | MGI Sequence Detail	2234	Not Applicable

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 5

  Developmental Gene Expression 1

  Gene Ontology 1

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
• Latest
  J:258363 Ushakov K, et al., Genome-wide identification and expression profiling of long non-coding RNAs in auditory and vestibular systems. Sci Rep. 2017 Aug 17;7(1):8637

TSS for Rncr4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55327	Chr6:30172859-30172869 (+)	-28 bp