Gm37305 Gene Detail

Summary

• Symbol
  Gm37305
• Name
  predicted gene, 37305

• Feature Type
  lncRNA gene
• IDs
  MGI:5610533
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:65865179-65869457 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610533	lncRNA gene	Chr3:65865179-65869457 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003762	antisense lncRNA gene	Chr3:65091963-65096241 (+)
A/J	MGP_AJ_G0003742	antisense lncRNA gene	Chr3:63207074-63211352 (+)
AKR/J	MGP_AKRJ_G0003719	antisense lncRNA gene	Chr3:64494580-64498858 (+)
BALB/cJ	MGP_BALBcJ_G0003731	antisense lncRNA gene	Chr3:63023845-63028123 (+)
C3H/HeJ	MGP_C3HHeJ_G0003678	antisense lncRNA gene	Chr3:64782240-64786518 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003872	antisense lncRNA gene	Chr3:67540561-67544839 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003376	antisense lncRNA gene	Chr3:59593553-59597810 (+)
CAST/EiJ	MGP_CASTEiJ_G0003641	antisense lncRNA gene	Chr3:64755519-64761155 (+)
CBA/J	MGP_CBAJ_G0003674	antisense lncRNA gene	Chr3:69632383-69636661 (+)
DBA/2J	MGP_DBA2J_G0003683	antisense lncRNA gene	Chr3:62703268-62707546 (+)
FVB/NJ	MGP_FVBNJ_G0003704	antisense lncRNA gene	Chr3:61355579-61359858 (+)
LP/J	MGP_LPJ_G0003763	antisense lncRNA gene	Chr3:66011156-66015434 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003692	antisense lncRNA gene	Chr3:74237006-74241285 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003873	antisense lncRNA gene	Chr3:64404593-64408871 (+)
PWK/PhJ	MGP_PWKPhJ_G0003598	antisense lncRNA gene	Chr3:62456076-62460559 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003540	antisense lncRNA gene	Chr3:63599792-63604092 (+)
WSB/EiJ	MGP_WSBEiJ_G0003677	antisense lncRNA gene	Chr3:64546355-64550633 (+)

Homology

• Gene Tree
  Gm37305
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm37305
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103041 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103041	Ensembl Gene Model | MGI Sequence Detail	4279	C57BL/6J
transcript	ENSMUST00000195714	Ensembl | MGI Sequence Detail	4279	Not Applicable

References

• Summaries
  All 5

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm37305:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29416	Chr3:65864909-65864958 (+)	-245 bp
Tssr29417	Chr3:65865728-65865756 (+)	563 bp
Tssr29418	Chr3:65865830-65865844 (+)	658 bp
Tssr29419	Chr3:65866130-65866142 (+)	957 bp