Gm37800 Gene Detail

Summary

• Symbol
  Gm37800
• Name
  predicted gene, 37800

• Feature Type
  lncRNA gene
• IDs
  MGI:5611028
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:184342477-184361670 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  618 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611028	lncRNA gene	Chr1:184342477-184361670 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005066	lincRNA gene	Chr1:191277755-191296764 (-)
A/J	MGP_AJ_G0005049	lincRNA gene	Chr1:183491946-183511164 (-)
AKR/J	MGP_AKRJ_G0005027	lincRNA gene	Chr1:188889554-188910364 (-)
BALB/cJ	MGP_BALBcJ_G0005030	lincRNA gene	Chr1:184113338-184135768 (-)
C3H/HeJ	MGP_C3HHeJ_G0004979	lincRNA gene	Chr1:189736585-189759519 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005179	lincRNA gene	Chr1:197398852-197418342 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004587	lincRNA gene	Chr1:174492734-174511820 (-)
CAST/EiJ	MGP_CASTEiJ_G0004925	lincRNA gene	Chr1:189151936-189171181 (-)
CBA/J	MGP_CBAJ_G0004969	lincRNA gene	Chr1:204772319-204791365 (-)
DBA/2J	MGP_DBA2J_G0004988	lincRNA gene	Chr1:182250162-182269326 (-)
FVB/NJ	MGP_FVBNJ_G0005009	lincRNA gene	Chr1:180347411-180366547 (-)
LP/J	MGP_LPJ_G0005066	lincRNA gene	Chr1:192453890-192473902 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004992	lincRNA gene	Chr1:211679279-211699771 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005186	lincRNA gene	Chr1:188744346-188763405 (-)
PWK/PhJ	MGP_PWKPhJ_G0004877	lincRNA gene	Chr1:181447433-181466976 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004802	lincRNA gene	Chr1:187709195-187730046 (-)
WSB/EiJ	MGP_WSBEiJ_G0004972	lincRNA gene	Chr1:188922820-188941921 (-)

Homology

• Gene Tree
  Gm37800
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000103308 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103308	Ensembl Gene Model | MGI Sequence Detail	19194	C57BL/6J
transcript	ENSMUST00000192129	Ensembl | MGI Sequence Detail	664	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37800:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15636	Chr1:184345106-184345114 (-)	16,560 bp