Gm38018 Pseudogene Detail

Summary

• Symbol
  Gm38018
• Name
  predicted gene, 38018

• Feature Type
  pseudogene
• IDs
  MGI:5611246
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:41481058-41482588 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611246	pseudogene	Chr6:41481058-41482588 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040433	pseudogene	Chr6:40007186-40008716 (+)
A/J	MGP_AJ_G0040414	pseudogene	Chr6:38265829-38267359 (+)
AKR/J	MGP_AKRJ_G0040341	pseudogene	Chr6:39504331-39505861 (+)
BALB/cJ	MGP_BALBcJ_G0040419	pseudogene	Chr6:38474845-38476375 (+)
C3H/HeJ	MGP_C3HHeJ_G0040040	pseudogene	Chr6:39536534-39538064 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041032	pseudogene	Chr6:41018455-41019985 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039105	pseudogene	Chr6:39340684-39342226 (+)
CBA/J	MGP_CBAJ_G0040010	pseudogene	Chr6:42717684-42719214 (+)
DBA/2J	MGP_DBA2J_G0040212	pseudogene	Chr6:38102615-38104145 (+)
FVB/NJ	MGP_FVBNJ_G0040161	pseudogene	Chr6:37824205-37825742 (+)
LP/J	MGP_LPJ_G0040253	pseudogene	Chr6:40020651-40022181 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040153	pseudogene	Chr6:44961390-44962920 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041110	pseudogene	Chr6:39481265-39482795 (+)
PWK/PhJ	MGP_PWKPhJ_G0038787	pseudogene	Chr6:37717496-37719033 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038496	pseudogene	Chr6:39088948-39090488 (+)
WSB/EiJ	MGP_WSBEiJ_G0039348	pseudogene	Chr6:39391429-39392966 (+)

Homology

• Gene Tree
  Gm38018
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000103699 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103699	Ensembl Gene Model | MGI Sequence Detail	1531	C57BL/6J
transcript	ENSMUST00000195651	Ensembl | MGI Sequence Detail	540	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;