Gm38060 Gene Detail

Summary

• Symbol
  Gm38060
• Name
  predicted gene, 38060

• Feature Type
  lncRNA gene
• IDs
  MGI:5611288
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:160666738-160667201 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611288	lncRNA gene	Chr1:160666738-160667201 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005014	lincRNA gene	Chr1:166076541-166077004 (+)
A/J	MGP_AJ_G0004996	lincRNA gene	Chr1:159318105-159318568 (+)
AKR/J	MGP_AKRJ_G0004974	lincRNA gene	Chr1:164181768-164182231 (+)
BALB/cJ	MGP_BALBcJ_G0004978	lincRNA gene	Chr1:159861963-159862426 (+)
C3H/HeJ	MGP_C3HHeJ_G0004926	lincRNA gene	Chr1:164386813-164387276 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005128	lincRNA gene	Chr1:171705632-171706095 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004539	lincRNA gene	Chr1:151441511-151441966 (+)
CAST/EiJ	MGP_CASTEiJ_G0004874	lincRNA gene	Chr1:163981921-163982384 (+)
CBA/J	MGP_CBAJ_G0004917	lincRNA gene	Chr1:177778510-177778973 (+)
DBA/2J	MGP_DBA2J_G0004936	lincRNA gene	Chr1:158292144-158292607 (+)
FVB/NJ	MGP_FVBNJ_G0004957	lincRNA gene	Chr1:156705063-156705526 (+)
LP/J	MGP_LPJ_G0005014	lincRNA gene	Chr1:167169162-167169625 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004941	lincRNA gene	Chr1:185351914-185352377 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005133	lincRNA gene	Chr1:164000873-164001336 (+)
PWK/PhJ	MGP_PWKPhJ_G0004826	lincRNA gene	Chr1:157445500-157445963 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004752	lincRNA gene	Chr1:162881626-162882107 (+)
WSB/EiJ	MGP_WSBEiJ_G0004920	lincRNA gene	Chr1:164187767-164188230 (+)

Homology

• Gene Tree
  Gm38060
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm38060
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103631 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103631	Ensembl Gene Model | MGI Sequence Detail	464	C57BL/6J
transcript	ENSMUST00000194822	Ensembl | MGI Sequence Detail	464	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;