Gm38165 Gene Detail

Summary

• Symbol
  Gm38165
• Name
  predicted gene, 38165

• Feature Type
  lncRNA gene
• IDs
  MGI:5611393
  NCBI Gene: 102641163
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:61824108-61825317 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611393	lncRNA gene	Chr18:61824108-61825455 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003454	antisense lncRNA gene	Chr18:61591639-61592993 (-)
A/J	MGP_AJ_G0003433	antisense lncRNA gene	Chr18:58947906-58949260 (-)
AKR/J	MGP_AKRJ_G0003413	antisense lncRNA gene	Chr18:60569752-60571110 (-)
BALB/cJ	MGP_BALBcJ_G0003422	antisense lncRNA gene	Chr18:59074266-59075607 (-)
C3H/HeJ	MGP_C3HHeJ_G0003371	antisense lncRNA gene	Chr18:60802765-60804103 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003560	antisense lncRNA gene	Chr18:63264648-63265986 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003074	antisense lncRNA gene	Chr18:58493121-58494476 (-)
CAST/EiJ	MGP_CASTEiJ_G0003334	antisense lncRNA gene	Chr18:60686673-60688012 (-)
CBA/J	MGP_CBAJ_G0003368	antisense lncRNA gene	Chr18:65317122-65318466 (-)
DBA/2J	MGP_DBA2J_G0003376	antisense lncRNA gene	Chr18:58617641-58618979 (-)
FVB/NJ	MGP_FVBNJ_G0003394	antisense lncRNA gene	Chr18:58029968-58031306 (-)
LP/J	MGP_LPJ_G0003448	antisense lncRNA gene	Chr18:61449264-61450622 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003382	antisense lncRNA gene	Chr18:66882611-66883960 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003563	antisense lncRNA gene	Chr18:60783564-60784902 (-)
PWK/PhJ	MGP_PWKPhJ_G0003290	antisense lncRNA gene	Chr18:58848905-58850247 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003235	antisense lncRNA gene	Chr18:61005417-61006763 (-)
WSB/EiJ	MGP_WSBEiJ_G0003368	antisense lncRNA gene	Chr18:60632746-60634105 (-)

Homology

• Gene Tree
  Gm38165
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102778 (Evidence)
• NCBI Gene
  102641163

Representative Sequences			Length	Strain/Species
genomic	102641163	NCBI Gene Model | MGI Sequence Detail	1210	C57BL/6J
transcript	XR_877473	RefSeq | MGI Sequence Detail	427	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;