Gm38182 Gene Detail

Summary

• Symbol
  Gm38182
• Name
  predicted gene, 38182

• Feature Type
  lncRNA gene
• IDs
  MGI:5611410
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr18:37956932-37973435 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  391 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611410	lncRNA gene	Chr18:37956932-37973435 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015362	unclassified non-coding RNA gene	Chr18:36241088-36258486 (+)
A/J	MGP_AJ_G0015336	unclassified non-coding RNA gene	Chr18:34993203-35010301 (+)
AKR/J	MGP_AKRJ_G0015300	unclassified non-coding RNA gene	Chr18:35951715-35971079 (+)
BALB/cJ	MGP_BALBcJ_G0015300	unclassified non-coding RNA gene	Chr18:35059399-35075918 (+)
C3H/HeJ	MGP_C3HHeJ_G0015124	unclassified non-coding RNA gene	Chr18:36020198-36037276 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015754	unclassified non-coding RNA gene	Chr18:37538547-37558211 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013495	unclassified non-coding RNA gene	Chr18:35010493-35026803 (+)
CAST/EiJ	MGP_CASTEiJ_G0014675	unclassified non-coding RNA gene	Chr18:35958567-35976343 (+)
CBA/J	MGP_CBAJ_G0015103	unclassified non-coding RNA gene	Chr18:38647349-38666450 (+)
DBA/2J	MGP_DBA2J_G0015198	unclassified non-coding RNA gene	Chr18:34592656-34609847 (+)
FVB/NJ	MGP_FVBNJ_G0015205	unclassified non-coding RNA gene	Chr18:34303151-34320102 (+)
LP/J	MGP_LPJ_G0015278	unclassified non-coding RNA gene	Chr18:36302176-36320322 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015231	unclassified non-coding RNA gene	Chr18:39910249-39927872 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015793	unclassified non-coding RNA gene	Chr18:35813785-35835713 (+)
PWK/PhJ	MGP_PWKPhJ_G0014465	unclassified non-coding RNA gene	Chr18:34799281-34817625 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014252	unclassified non-coding RNA gene	Chr18:36034669-36052837 (+)
WSB/EiJ	MGP_WSBEiJ_G0014782	unclassified non-coding RNA gene	Chr18:35715675-35736363 (+)

Homology

• Gene Tree
  Gm38182
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm38182
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000102828 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102828	Ensembl Gene Model | MGI Sequence Detail	16504	C57BL/6J
transcript	ENSMUST00000192984	Ensembl | MGI Sequence Detail	993	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)

TSS for Gm38182:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150758	Chr18:37957124-37957133 (+)	197 bp
Tssr150759	Chr18:37957143-37957156 (+)	218 bp
Tssr150760	Chr18:37957634-37957687 (+)	729 bp
Tssr150761	Chr18:37957999-37958025 (+)	1,080 bp
Tssr150762	Chr18:37958056-37958109 (+)	1,151 bp
Tssr150763	Chr18:37959753-37959760 (+)	2,825 bp
Tssr150764	Chr18:37959770-37959787 (+)	2,847 bp
Tssr150765	Chr18:37963654-37963658 (+)	6,724 bp