Gm38216 Pseudogene Detail

Summary

• Symbol
  Gm38216
• Name
  predicted gene, 38216

• Feature Type
  pseudogene
• IDs
  MGI:5611444
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:7799085-7800789 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  218 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611444	pseudogene	Chr1:7799085-7800789 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0009984	pseudogene	Chr1:4988736-4990236 (-)
A/J	MGP_AJ_G0009965	pseudogene	Chr1:5015778-5017285 (-)
AKR/J	MGP_AKRJ_G0009948	pseudogene	Chr1:4907588-4909041 (-)
BALB/cJ	MGP_BALBcJ_G0009953	pseudogene	Chr1:4787136-4788523 (-)
C3H/HeJ	MGP_C3HHeJ_G0009881	pseudogene	Chr1:4881008-4883230 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010200	pseudogene	Chr1:5150032-5152279 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008983	pseudogene	Chr1:4153670-4155401 (-)
CAST/EiJ	MGP_CASTEiJ_G0009736	pseudogene	Chr1:5059564-5061024 (-)
CBA/J	MGP_CBAJ_G0009857	pseudogene	Chr1:5357829-5361394 (-)
DBA/2J	MGP_DBA2J_G0009881	pseudogene	Chr1:4717186-4718684 (-)
FVB/NJ	MGP_FVBNJ_G0009907	pseudogene	Chr1:4659103-4661062 (-)
LP/J	MGP_LPJ_G0009978	pseudogene	Chr1:5113294-5115308 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009867	pseudogene	Chr1:5696639-5698001 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010175	pseudogene	Chr1:4843694-4845171 (-)
PWK/PhJ	MGP_PWKPhJ_G0009641	pseudogene	Chr1:4569635-4571967 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009458	pseudogene	Chr1:4997280-4999998 (-)
WSB/EiJ	MGP_WSBEiJ_G0009799	pseudogene	Chr1:4812346-4815592 (-)

Homology

• Gene Tree
  Gm38216
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103557 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103557	Ensembl Gene Model | MGI Sequence Detail	1705	C57BL/6J
transcript	ENSMUST00000194872	Ensembl | MGI Sequence Detail	1214	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;