Gm38304 Gene Detail

Summary

• Symbol
  Gm38304
• Name
  predicted gene, 38304

• Feature Type
  lncRNA gene
• IDs
  MGI:5611532
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:161796769-161854675 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1544 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611532	lncRNA gene	Chr1:161796769-161854675 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002776	antisense lncRNA gene	Chr1:167276109-167338289 (+)
A/J	MGP_AJ_G0002752	antisense lncRNA gene	Chr1:160468592-160529292 (+)
AKR/J	MGP_AKRJ_G0002733	antisense lncRNA gene	Chr1:165345283-165404445 (+)
BALB/cJ	MGP_BALBcJ_G0002739	antisense lncRNA gene	Chr1:161017526-161079133 (+)
C3H/HeJ	MGP_C3HHeJ_G0002697	antisense lncRNA gene	Chr1:165561935-165619941 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002882	antisense lncRNA gene	Chr1:172932205-172990834 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002429	antisense lncRNA gene	Chr1:152558325-152618422 (+)
CAST/EiJ	MGP_CASTEiJ_G0002670	antisense lncRNA gene	Chr1:165186535-165247474 (+)
CBA/J	MGP_CBAJ_G0002693	antisense lncRNA gene	Chr1:179079566-179144884 (+)
DBA/2J	MGP_DBA2J_G0002699	antisense lncRNA gene	Chr1:159432792-159495212 (+)
FVB/NJ	MGP_FVBNJ_G0002719	antisense lncRNA gene	Chr1:157841796-157899286 (+)
LP/J	MGP_LPJ_G0002777	antisense lncRNA gene	Chr1:168390160-168449010 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002709	antisense lncRNA gene	Chr1:186615396-186676068 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002886	antisense lncRNA gene	Chr1:165187849-165247322 (+)
PWK/PhJ	MGP_PWKPhJ_G0002627	antisense lncRNA gene	Chr1:158610033-158668745 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002578	antisense lncRNA gene	Chr1:164066155-164123425 (+)
WSB/EiJ	MGP_WSBEiJ_G0002699	antisense lncRNA gene	Chr1:165354809-165420932 (+)

Homology

• Gene Tree
  Gm38304
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving Gm38304
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103393 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103393	Ensembl Gene Model | MGI Sequence Detail	57907	C57BL/6J
transcript	ENSMUST00000161826	Ensembl | MGI Sequence Detail	600	Not Applicable

References

• Summaries
  All 5

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm38304:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9706	Chr1:161796748-161796828 (+)	19 bp
Tssr9707	Chr1:161796853-161796882 (+)	99 bp