Gm38389 Gene Detail

Summary

• Symbol
  Gm38389
• Name
  predicted gene, 38389

• Feature Type
  lncRNA gene
• IDs
  MGI:5613626
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:33987409-34001456 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  349 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5613626	lncRNA gene	Chr2:33987409-34001456 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005896	lincRNA gene	Chr2:32656036-32670083 (-)
A/J	MGP_AJ_G0005889	lincRNA gene	Chr2:31282411-31296475 (-)
AKR/J	MGP_AKRJ_G0005864	lincRNA gene	Chr2:32391836-32405895 (-)
BALB/cJ	MGP_BALBcJ_G0005868	lincRNA gene	Chr2:31387175-31401222 (-)
C3H/HeJ	MGP_C3HHeJ_G0005815	lincRNA gene	Chr2:32274399-32288446 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006028	lincRNA gene	Chr2:33625709-33639756 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005363	lincRNA gene	Chr2:30000730-30015217 (-)
CAST/EiJ	MGP_CASTEiJ_G0005751	lincRNA gene	Chr2:32248139-32262076 (-)
CBA/J	MGP_CBAJ_G0005800	lincRNA gene	Chr2:34924299-34938346 (-)
DBA/2J	MGP_DBA2J_G0005821	lincRNA gene	Chr2:31053157-31067128 (-)
FVB/NJ	MGP_FVBNJ_G0005847	lincRNA gene	Chr2:30938741-30952795 (-)
LP/J	MGP_LPJ_G0005900	lincRNA gene	Chr2:32572741-32586788 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005834	lincRNA gene	Chr2:34460647-34474713 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006025	lincRNA gene	Chr2:32260112-32274172 (-)
PWK/PhJ	MGP_PWKPhJ_G0005700	lincRNA gene	Chr2:30957082-30971149 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005612	lincRNA gene	Chr2:32449093-32463432 (-)
WSB/EiJ	MGP_WSBEiJ_G0005804	lincRNA gene	Chr2:32441711-32455783 (-)

Homology

• Gene Tree
  Gm38389
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103413 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103413	Ensembl Gene Model | MGI Sequence Detail	14048	C57BL/6J
transcript	ENSMUST00000147871	Ensembl | MGI Sequence Detail	653	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;