Gm38396 Gene Detail

Summary

• Symbol
  Gm38396
• Name
  predicted gene, 38396

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5618688
  NCBI Gene: 626854
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:17399231-17426657 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic

Strain
Comparison

• SNPs within 2kb
  659 from dbSNP Build 142

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	no annotation
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm38396
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  93
• Gene trapped
  93
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000122616 (Evidence)
• NCBI Gene
  626854

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000122616	Ensembl Gene Model | MGI Sequence Detail	27427	C57BL/6J
transcript	ENSMUST00000254007	Ensembl | MGI Sequence Detail	2362	Not Applicable
polypeptide	NP_001344917	RefSeq | MGI Sequence Detail	634	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036051 KRAB domain superfamily
  IPR001909 Krueppel-associated box
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type
  IPR050758 Zinc finger protein, C2H2-type

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9