Gm38404 Gene Detail

Summary

• Symbol
  Gm38404
• Name
  predicted gene, 38404

• Feature Type
  lncRNA gene
• IDs
  MGI:5621289
  NCBI Gene: 232386
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:127273149-127284930 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  418 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621289	lncRNA gene	Chr6:127273149-127284930 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007067	lincRNA gene	Chr6:130792165-130803904 (-)
A/J	MGP_AJ_G0007063	lincRNA gene	Chr6:125820054-125831609 (-)
AKR/J	MGP_AKRJ_G0007032	lincRNA gene	Chr6:129217498-129230400 (-)
BALB/cJ	MGP_BALBcJ_G0007038	lincRNA gene	Chr6:125373946-125386475 (-)
C3H/HeJ	MGP_C3HHeJ_G0006983	lincRNA gene	Chr6:129343168-129354571 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007204	lincRNA gene	Chr6:134201595-134214260 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006430	lincRNA gene	Chr6:122994225-123005659 (-)
CAST/EiJ	MGP_CASTEiJ_G0006894	lincRNA gene	Chr6:129550569-129562181 (-)
CBA/J	MGP_CBAJ_G0006963	lincRNA gene	Chr6:139365419-139378766 (-)
DBA/2J	MGP_DBA2J_G0006985	lincRNA gene	Chr6:124704893-124716668 (-)
FVB/NJ	MGP_FVBNJ_G0007009	lincRNA gene	Chr6:123633239-123644674 (-)
LP/J	MGP_LPJ_G0007070	lincRNA gene	Chr6:130899531-130910688 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006989	lincRNA gene	Chr6:143309735-143322814 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007209	lincRNA gene	Chr6:129179234-129192342 (-)
PWK/PhJ	MGP_PWKPhJ_G0006834	lincRNA gene	Chr6:122982318-122994262 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006744	lincRNA gene	Chr6:127260781-127276640 (-)
WSB/EiJ	MGP_WSBEiJ_G0006952	lincRNA gene	Chr6:129541488-129553585 (-)

Homology

• Gene Tree
  Gm38404
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107153 (Evidence)
• NCBI Gene
  232386

Representative Sequences			Length	Strain/Species
genomic	232386	NCBI Gene Model | MGI Sequence Detail	11782	C57BL/6J
transcript	NR_073373	RefSeq | MGI Sequence Detail	2496	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;