Gm38504 Gene Detail

Summary

• Symbol
  Gm38504
• Name
  predicted gene, 38504

• Feature Type
  lncRNA gene
• IDs
  MGI:5621389
  NCBI Gene: 102637959
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:88972303-88984239 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  485 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621389	lncRNA gene	Chr13:88972303-88984239 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38504
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  102637959

Representative Sequences			Length	Strain/Species
genomic	102637959	NCBI Gene Model | MGI Sequence Detail	11937	C57BL/6J
transcript	XR_382711	RefSeq | MGI Sequence Detail	8027	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm38504:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120575	Chr13:88971710-88971714 (+)	-591 bp
Tssr120576	Chr13:88972333-88972337 (+)	32 bp
Tssr120577	Chr13:88975613-88975614 (+)	3,311 bp