Gm38525 Gene Detail

Summary

• Symbol
  Gm38525
• Name
  predicted gene, 38525

• Feature Type
  protein coding gene
• IDs
  MGI:5621410
  NCBI Gene: 102640171
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:104003766-104019090 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  854 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621410	protein coding gene	Chr7:104003766-104019090 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm38525
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  8

• NCBI Gene
  102640171

Representative Sequences			Length	Strain/Species
genomic	102640171	NCBI Gene Model | MGI Sequence Detail	15325	C57BL/6J
transcript	XM_006508379	RefSeq | MGI Sequence Detail	3571	C57BL/6J
polypeptide	XP_036009560	RefSeq | MGI Sequence Detail	319	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm38525:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr73988	Chr7:104019091-104019103 (-)	-7 bp
Tssr73987	Chr7:104019045-104019083 (-)	26 bp
Tssr73986	Chr7:104019033-104019044 (-)	51 bp