Gm38554 Gene Detail

Summary

• Symbol
  Gm38554
• Name
  predicted gene, 38554
• Synonyms
  Gm43277

• Feature Type
  lncRNA gene
• IDs
  MGI:5621439
  NCBI Gene: 102641385
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:120097308-120101445 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  249 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621439	lncRNA gene	Chr5:120097242-120101447 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006795	lincRNA gene	Chr5:123266880-123271026 (+)
A/J	MGP_AJ_G0006789	lincRNA gene	Chr5:118181628-118185776 (+)
AKR/J	MGP_AKRJ_G0006759	lincRNA gene	Chr5:122002502-122006773 (+)
BALB/cJ	MGP_BALBcJ_G0006765	lincRNA gene	Chr5:119606196-119610346 (+)
C3H/HeJ	MGP_C3HHeJ_G0006710	lincRNA gene	Chr5:122537217-122541362 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006930	lincRNA gene	Chr5:127906864-127911001 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006185	lincRNA gene	Chr5:112909279-112913196 (+)
CAST/EiJ	MGP_CASTEiJ_G0006633	lincRNA gene	Chr5:121631196-121635304 (+)
CBA/J	MGP_CBAJ_G0006692	lincRNA gene	Chr5:132887284-132891425 (+)
DBA/2J	MGP_DBA2J_G0006712	lincRNA gene	Chr5:118283294-118287444 (+)
FVB/NJ	MGP_FVBNJ_G0006736	lincRNA gene	Chr5:117189776-117193942 (+)
LP/J	MGP_LPJ_G0006796	lincRNA gene	Chr5:123741735-123745885 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006719	lincRNA gene	Chr5:136898925-136903091 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006932	lincRNA gene	Chr5:121575655-121579805 (+)
PWK/PhJ	MGP_PWKPhJ_G0006572	lincRNA gene	Chr5:117027251-117031590 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006478	lincRNA gene	Chr5:119216459-119220659 (+)
WSB/EiJ	MGP_WSBEiJ_G0006684	lincRNA gene	Chr5:122160820-122164950 (+)

Homology

• Gene Tree
  Gm38554
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm38554
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107063 (Evidence)
• NCBI Gene
  102641385

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107063	Ensembl Gene Model | MGI Sequence Detail	4138	C57BL/6J
transcript	ENSMUST00000201639	Ensembl | MGI Sequence Detail	708	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663414

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm38554:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48496	Chr5:120097275-120097310 (+)	-15 bp