Gm38569 Gene Detail

Summary

• Symbol
  Gm38569
• Name
  predicted gene, 38569
• Synonyms
  Gm44880

• Feature Type
  lncRNA gene
• IDs
  MGI:5621454
  NCBI Gene: 102641661
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:25283649-25294201 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  267 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621454	lncRNA gene	Chr7:25283186-25294874 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007131	lincRNA gene	Chr7:24078232-24092063 (+)
A/J	MGP_AJ_G0007127	lincRNA gene	Chr7:23448702-23455444 (+)
AKR/J	MGP_AKRJ_G0007096	lincRNA gene	Chr7:24048020-24058283 (+)
BALB/cJ	MGP_BALBcJ_G0007104	lincRNA gene	Chr7:23693038-23706872 (+)
C3H/HeJ	MGP_C3HHeJ_G0007049	lincRNA gene	Chr7:24477650-24484218 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007269	lincRNA gene	Chr7:24884788-24899639 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006492	lincRNA gene	Chr7:24795956-24803960 (+)
CAST/EiJ	MGP_CASTEiJ_G0006952	lincRNA gene	Chr7:17883371-17891047 (+)
CBA/J	MGP_CBAJ_G0007030	lincRNA gene	Chr7:25776164-25786450 (+)
DBA/2J	MGP_DBA2J_G0007051	lincRNA gene	Chr7:23357097-23364115 (+)
FVB/NJ	MGP_FVBNJ_G0007074	lincRNA gene	Chr7:23382857-23393509 (+)
LP/J	MGP_LPJ_G0007134	lincRNA gene	Chr7:24368579-24375196 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007053	lincRNA gene	Chr7:25495431-25512938 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007275	lincRNA gene	Chr7:23700091-23707937 (+)
PWK/PhJ	MGP_PWKPhJ_G0006895	lincRNA gene	Chr7:18291801-18312329 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006807	lincRNA gene	Chr7:15025450-15031647 (+)
WSB/EiJ	MGP_WSBEiJ_G0007013	lincRNA gene	Chr7:23918429-23928317 (+)

Homology

• Gene Tree
  Gm38569
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000108553 (Evidence)
• NCBI Gene
  102641661

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108553	Ensembl Gene Model | MGI Sequence Detail	10553	C57BL/6J
transcript	ENSMUST00000205476	Ensembl | MGI Sequence Detail	2228	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5753456

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;