Gm38642 Gene Detail

Summary

• Symbol
  Gm38642
• Name
  predicted gene, 38642

• Feature Type
  lncRNA gene
• IDs
  MGI:5621527
  NCBI Gene: 102642880
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:120043650-120086112 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1583 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621527	lncRNA gene	Chr9:120008104-120109393 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  1

• Ensembl
  ENSMUSG00000111219 (Evidence), ENSMUSG00000111360 (Evidence)
• NCBI Gene
  102642880

Representative Sequences			Length	Strain/Species
genomic	102642880	NCBI Gene Model | MGI Sequence Detail	42463	C57BL/6J
transcript	XR_871360	RefSeq | MGI Sequence Detail	575	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;