Gm38666 Gene Detail

Summary

• Symbol
  Gm38666
• Name
  predicted gene, 38666

• Feature Type
  protein coding gene
• IDs
  MGI:5621551
  NCBI Gene: 103611158
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:37102969-37966349 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23551 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621551	protein coding gene	Chr18:37100684-37974926 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024301	protein coding gene	Chr18:35382737-36251401 (+)
A/J	MGP_AJ_G0024267	protein coding gene	Chr18:34146491-35003194 (+)
AKR/J	MGP_AKRJ_G0024235	protein coding gene	Chr18:35116511-35963994 (+)
BALB/cJ	MGP_BALBcJ_G0024267	protein coding gene	Chr18:34193979-35068811 (+)
C3H/HeJ	MGP_C3HHeJ_G0024034	protein coding gene	Chr18:35165010-36030210 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024708	protein coding gene	Chr18:36636504-37549446 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022148	protein coding gene	Chr18:34241051-35019697 (+)
CAST/EiJ	MGP_CASTEiJ_G0023509	protein coding gene	Chr18:35165607-35969236 (+)
CBA/J	MGP_CBAJ_G0024002	protein coding gene	Chr18:37715684-38659344 (+)
DBA/2J	MGP_DBA2J_G0024134	protein coding gene	Chr18:33761920-34602736 (+)
FVB/NJ	MGP_FVBNJ_G0024100	protein coding gene	Chr18:33474197-34313019 (+)
LP/J	MGP_LPJ_G0024216	protein coding gene	Chr18:35425131-36313055 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024129	protein coding gene	Chr18:38962040-39920811 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024757	protein coding gene	Chr18:34971460-35828624 (+)
PWK/PhJ	MGP_PWKPhJ_G0023253	protein coding gene	Chr18:34003995-34810305 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023053	protein coding gene	Chr18:35142275-36045708 (+)
WSB/EiJ	MGP_WSBEiJ_G0023572	protein coding gene	Chr18:34880998-35729278 (+)

Homology

• Gene Tree
  Gm38666
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Endonuclease-mediated
  1
• Targeted
  4
• Genomic Mutations
  5 involving Gm38666
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000102836 (Evidence)
• NCBI Gene
  103611158

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102836	Ensembl Gene Model | MGI Sequence Detail	863381	C57BL/6J
transcript	ENSMUST00000194544	Ensembl | MGI Sequence Detail	313	Not Applicable
polypeptide	ENSMUSP00000141847	Ensembl | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR031904 Cadherin, C-terminal catenin-binding domain

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:78249 Wang X, et al., Molecular mechanisms governing Pcdh-gamma gene expression: evidence for a multiple promoter and cis-alternative splicing model. Genes Dev. 2002 Aug 1;16(15):1890-905
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)