Gm38667 Gene Detail

Summary

• Symbol
  Gm38667
• Name
  predicted gene, 38667

• Feature Type
  protein coding gene
• IDs
  MGI:5621552
  NCBI Gene: 103611159
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:37106855-37974926 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23575 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621552	protein coding gene	Chr18:37106855-37974926 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Endonuclease-mediated
  1
• Targeted
  4
• Genomic Mutations
  5 involving Gm38667
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  2
• UniProt
  1

• NCBI Gene
  103611159

Representative Sequences			Length	Strain/Species
genomic	103611159	NCBI Gene Model | MGI Sequence Detail	868072	C57BL/6J
transcript	NM_001301259	RefSeq | MGI Sequence Detail	4596	ZRU/MplStud
polypeptide	NP_001288188	RefSeq | MGI Sequence Detail	918	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR031904 Cadherin, C-terminal catenin-binding domain

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:78249 Wang X, et al., Molecular mechanisms governing Pcdh-gamma gene expression: evidence for a multiple promoter and cis-alternative splicing model. Genes Dev. 2002 Aug 1;16(15):1890-905
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)