Gm38753 Gene Detail

Summary

• Symbol
  Gm38753
• Name
  predicted gene, 38753

• Feature Type
  lncRNA gene
• IDs
  MGI:5621638
  NCBI Gene: 105242580
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:149284482-149291012 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  329 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621638	lncRNA gene	Chr5:149284482-149291012 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  105242580

Representative Sequences			Length	Strain/Species
genomic	105242580	NCBI Gene Model | MGI Sequence Detail	6531	C57BL/6J
transcript	XR_868733	RefSeq | MGI Sequence Detail	1534	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm38753:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54640	Chr5:149291632-149291650 (-)	-629 bp
Tssr54639	Chr5:149290627-149290636 (-)	380 bp
Tssr54638	Chr5:149290596-149290625 (-)	401 bp
Tssr54637	Chr5:149290582-149290589 (-)	426 bp
Tssr54636	Chr5:149290562-149290567 (-)	447 bp
Tssr54635	Chr5:149290543-149290550 (-)	465 bp
Tssr54634	Chr5:149290524-149290533 (-)	483 bp