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Gm39090 Gene Detail
Summary
  • Symbol
    Gm39090
  • Name
    predicted gene, 39090
  • Synonyms
    Gm44514
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5621975
    NCBI Gene: 105243058
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:127291102-127300814 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    338 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5621975
 lncRNA gene Chr7:127290835-127300814 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007277
 lincRNA gene Chr7:132057427-132070821 (+)
A/J MGP_AJ_G0007274
 lincRNA gene Chr7:128536954-128546134 (+)
AKR/J MGP_AKRJ_G0007244
 lincRNA gene Chr7:131858661-131867263 (+)
BALB/cJ MGP_BALBcJ_G0007252
 lincRNA gene Chr7:128188125-128196625 (+)
C3H/HeJ MGP_C3HHeJ_G0007196
 lincRNA gene Chr7:131758173-131767400 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007422
 lincRNA gene Chr7:137204387-137216490 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006627
 lincRNA gene Chr7:129734077-129742720 (+)
CAST/EiJ MGP_CASTEiJ_G0007098
 lincRNA gene Chr7:123552682-123562994 (+)
CBA/J MGP_CBAJ_G0007179
 lincRNA gene Chr7:141850815-141861986 (+)
DBA/2J MGP_DBA2J_G0007200
 lincRNA gene Chr7:126514773-126523782 (+)
FVB/NJ MGP_FVBNJ_G0007222
 lincRNA gene Chr7:126366939-126375359 (+)
LP/J MGP_LPJ_G0007282
 lincRNA gene Chr7:133537254-133546863 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007199
 lincRNA gene Chr7:142942429-142952488 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007425
 lincRNA gene Chr7:130844330-130854427 (+)
PWK/PhJ MGP_PWKPhJ_G0007040
 lincRNA gene Chr7:119526982-119536802 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006948
 lincRNA gene Chr7:117649134-117660099 (+)
WSB/EiJ MGP_WSBEiJ_G0007159
 lincRNA gene Chr7:131806078-131820891 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000108801 Ensembl Gene Model | MGI Sequence Detail 9713 C57BL/6J ±  kb
transcript ENSMUST00000246564 Ensembl | MGI Sequence Detail 1870 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:5753090
References
more
  • Summaries
    All 8
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory