Gm39213 Gene Detail

Summary

• Symbol
  Gm39213
• Name
  predicted gene, 39213

• Feature Type
  lncRNA gene
• IDs
  MGI:5622098
  NCBI Gene: 105243239
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:85620637-85626780 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  203 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622098	lncRNA gene	Chr8:85620011-85626786 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm39213
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  34 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm39213
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  2

• Ensembl
  ENSMUSG00000119989 (Evidence)
• NCBI Gene
  105243239

Representative Sequences			Length	Strain/Species
genomic	105243239	NCBI Gene Model | MGI Sequence Detail	6144	C57BL/6J
transcript	NR_168730	RefSeq | MGI Sequence Detail	487	ZRU/MplStud

References

• Summaries
  All 37

  Phenotypes 34
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Gm39213:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78459	Chr8:85620008-85620013 (+)	-626 bp
Tssr78460	Chr8:85620618-85620650 (+)	-3 bp