Gm39772 Gene Detail

Summary

• Symbol
  Gm39772
• Name
  predicted gene, 39772

• Feature Type
  lncRNA gene
• IDs
  MGI:5622657
  NCBI Gene: 105244098
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr2:26498194-26507374 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  312 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622657	lncRNA gene	Chr2:26498194-26507374 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  11
• Gene trapped
  11
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105244098

Representative Sequences			Length	Strain/Species
genomic	105244098	NCBI Gene Model | MGI Sequence Detail	9181	C57BL/6J
transcript	XR_866059	RefSeq | MGI Sequence Detail	270	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39772:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23152	Chr2:26507489-26507495 (-)	-118 bp
Tssr23151	Chr2:26507474-26507485 (-)	-106 bp
Tssr23150	Chr2:26507463-26507471 (-)	-93 bp
Tssr23149	Chr2:26498682-26498687 (-)	8,689 bp
Tssr23148	Chr2:26498631-26498646 (-)	8,735 bp
Tssr23147	Chr2:26498266-26498273 (-)	9,104 bp
Tssr23146	Chr2:26498184-26498205 (-)	9,179 bp