Gm39847 Gene Detail

Summary

• Symbol
  Gm39847
• Name
  predicted gene, 39847

• Feature Type
  lncRNA gene
• IDs
  MGI:5622732
  NCBI Gene: 105244197
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:72287652-72295072 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  317 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622732	lncRNA gene	Chr2:72287652-72295072 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm39847
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105244197

Representative Sequences			Length	Strain/Species
genomic	105244197	NCBI Gene Model | MGI Sequence Detail	7421	C57BL/6J
transcript	XR_866421	RefSeq | MGI Sequence Detail	1448	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:192248 Montavon T, et al., Impact of copy number variations (CNVs) on long-range gene regulation at the HoxD locus. Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20204-11
• Latest
  J:198797 Lonfat N, et al., Transgene- and locus-dependent imprinting reveals allele-specific chromosome conformations. Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11946-51