Gm39859 Gene Detail

Summary

• Symbol
  Gm39859
• Name
  predicted gene, 39859

• Feature Type
  lncRNA gene
• IDs
  MGI:5622744
  NCBI Gene: 105244210
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:75488459-75489307 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622744	lncRNA gene	Chr2:75478309-75489307 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm39859
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  25
• Chemically induced (other)
  1
• Gene trapped
  24
• Genomic Mutations
  1 involving Gm39859
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  2

• Ensembl
  ENSMUSG00000120684 (Evidence)
• NCBI Gene
  105244210

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120684	Ensembl Gene Model | MGI Sequence Detail	849	C57BL/6J
transcript	ENSMUST00000245139	Ensembl | MGI Sequence Detail	849	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39859:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24644	Chr2:75490119-75490161 (-)	-833 bp
Tssr24643	Chr2:75489230-75489303 (-)	40 bp