Gm39918 Gene Detail

Summary

• Symbol
  Gm39918
• Name
  predicted gene, 39918

• Feature Type
  lncRNA gene
• IDs
  MGI:5622803
  NCBI Gene: 105244278
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:122205314-122219669 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  457 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622803	lncRNA gene	Chr2:122205314-122219669 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm39918
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  2

• NCBI Gene
  105244278

Representative Sequences			Length	Strain/Species
genomic	105244278	NCBI Gene Model | MGI Sequence Detail	14356	C57BL/6J
transcript	NR_166176	RefSeq | MGI Sequence Detail	2370	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39918:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19844	Chr2:122206175-122206202 (+)	875 bp
Tssr19846	Chr2:122213418-122213433 (+)	8,112 bp