Gm39954 Gene Detail

Summary

• Symbol
  Gm39954
• Name
  predicted gene, 39954

• Feature Type
  lncRNA gene
• IDs
  MGI:5622839
  NCBI Gene: 105244320
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:145722034-145736122 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  454 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622839	lncRNA gene	Chr2:145722034-145736122 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm39954
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  2

• NCBI Gene
  105244320

Representative Sequences			Length	Strain/Species
genomic	105244320	NCBI Gene Model | MGI Sequence Detail	14089	C57BL/6J
transcript	AK036067	GenBank | ENA | DDBJ | MGI Sequence Detail	2909	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Gm39954:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26615	Chr2:145726825-145726834 (-)	9,292 bp