Gm40011 Gene Detail

Summary

• Symbol
  Gm40011
• Name
  predicted gene, 40011

• Feature Type
  protein coding gene
• IDs
  MGI:5622896
  NCBI Gene: 105244392
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr2:172924573-172980047 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1911 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622896	protein coding gene	Chr2:172924573-172980047 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  11

• NCBI Gene
  105244392

Representative Sequences			Length	Strain/Species
genomic	105244392	NCBI Gene Model | MGI Sequence Detail	55475	C57BL/6J
transcript	XR_867074	RefSeq | MGI Sequence Detail	3760	C57BL/6J
polypeptide	XP_011238199	RefSeq | MGI Sequence Detail	216	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm40011:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22011	Chr2:172924566-172924573 (+)	-3 bp
Tssr22012	Chr2:172924593-172924603 (+)	25 bp
Tssr22013	Chr2:172931694-172931697 (+)	7,123 bp
Tssr22014	Chr2:172952589-172952610 (+)	28,027 bp
Tssr22015	Chr2:172952613-172952627 (+)	28,047 bp
Tssr22016	Chr2:172952641-172952648 (+)	28,072 bp
Tssr22017	Chr2:172978898-172978919 (+)	54,336 bp