Gm40263 Gene Detail

Summary

• Symbol
  Gm40263
• Name
  predicted gene, 40263
• Synonyms
  Gm43325

• Feature Type
  lncRNA gene
• IDs
  MGI:5623148
  NCBI Gene: 105244704
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:6464399-6477065 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  382 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623148	lncRNA gene	Chr5:6464399-6477065 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006575	lincRNA gene	Chr5:3347770-3356290 (+)
A/J	MGP_AJ_G0006566	lincRNA gene	Chr5:3225114-3226406 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0006541	lincRNA gene	Chr5:3444815-3457324 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0006707	lincRNA gene	Chr5:3761241-3775569 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0006516	lincRNA gene	Chr5:3192300-3204921 (+)
LP/J	MGP_LPJ_G0006576	lincRNA gene	Chr5:3464579-3474040 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006503	lincRNA gene	Chr5:3614441-3627199 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006711	lincRNA gene	Chr5:3333693-3341022 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0006468	lincRNA gene	Chr5:3382460-3390601 (+)

Homology

• Gene Tree
  Gm40263
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12

• Ensembl
  ENSMUSG00000106064 (Evidence)
• NCBI Gene
  105244704

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106064	Ensembl Gene Model | MGI Sequence Detail	12667	C57BL/6J
transcript	ENSMUST00000197468	Ensembl | MGI Sequence Detail	580	Not Applicable

Other
Accession IDs

MGI:5663462

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;