Gm40377 Gene Detail

Summary

• Symbol
  Gm40377
• Name
  predicted gene, 40377
• Synonyms
  Gm44362

• Feature Type
  lncRNA gene
• IDs
  MGI:5623262
  NCBI Gene: 105244843
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:73200033-73202047 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  211 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623262	lncRNA gene	Chr6:73199760-73202818 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001952	unclassified gene	Chr6:73837529-73840161 (+)
A/J	MGP_AJ_G0001929	unclassified gene	Chr6:70916605-70918547 (+)
AKR/J	MGP_AKRJ_G0001916	unclassified gene	Chr6:73045653-73047625 (+)
BALB/cJ	MGP_BALBcJ_G0001926	unclassified gene	Chr6:70981583-70984727 (+)
C3H/HeJ	MGP_C3HHeJ_G0001999	unclassified gene	Chr6:111201101-111203017 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002047	unclassified gene	Chr6:75735139-75737109 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001703	unclassified gene	Chr6:70098154-70100125 (+)
CAST/EiJ	MGP_CASTEiJ_G0001870	unclassified gene	Chr6:72941164-72943155 (+)
CBA/J	MGP_CBAJ_G0001896	unclassified gene	Chr6:78863582-78865537 (+)
DBA/2J	MGP_DBA2J_G0001900	unclassified gene	Chr6:70329462-70331360 (+)
FVB/NJ	MGP_FVBNJ_G0001908	unclassified gene	Chr6:69731329-69733705 (+)
LP/J	MGP_LPJ_G0001955	unclassified gene	Chr6:73740571-73742477 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001886	unclassified gene	Chr6:82198760-82200703 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002037	unclassified gene	Chr6:72882378-72885105 (+)
PWK/PhJ	MGP_PWKPhJ_G0001833	unclassified gene	Chr6:69276140-69278089 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001795	unclassified gene	Chr6:71647795-71651678 (+)
WSB/EiJ	MGP_WSBEiJ_G0001896	unclassified gene	Chr6:73264969-73266907 (+)

Homology

• Gene Tree
  Gm40377
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  3

• Ensembl
  ENSMUSG00000107440 (Evidence)
• NCBI Gene
  105244843

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107440	Ensembl Gene Model | MGI Sequence Detail	2015	C57BL/6J
transcript	XR_869181	RefSeq | MGI Sequence Detail	590	C57BL/6J

Other
Accession IDs

MGI:5690754

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm40377:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57171	Chr6:73200024-73200041 (+)	0 bp