Gm41810 Gene Detail

Summary

• Symbol
  Gm41810
• Name
  predicted gene, 41810

• Feature Type
  lncRNA gene
• IDs
  MGI:5624695
  NCBI Gene: 105246536
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr19:11793034-11798488 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  344 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624695	lncRNA gene	Chr19:11793034-11798488 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  105246536

Representative Sequences			Length	Strain/Species
genomic	105246536	NCBI Gene Model | MGI Sequence Detail	5455	C57BL/6J
transcript	AK044380	GenBank | ENA | DDBJ | MGI Sequence Detail	696	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm41810:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155283	Chr19:11795439-11795468 (+)	2,420 bp
Tssr155284	Chr19:11795469-11795479 (+)	2,440 bp
Tssr155285	Chr19:11795907-11795940 (+)	2,890 bp
Tssr155286	Chr19:11796400-11796406 (+)	3,369 bp