Gm41949 Gene Detail

Summary

• Symbol
  Gm41949
• Name
  predicted gene, 41949

• Feature Type
  lncRNA gene
• IDs
  MGI:5624834
  NCBI Gene: 105246702
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:128172296-128179817 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  283 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624834	lncRNA gene	Chr1:128172296-128179817 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm41949
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• NCBI Gene
  105246702

Representative Sequences			Length	Strain/Species
genomic	105246702	NCBI Gene Model | MGI Sequence Detail	7522	C57BL/6J
transcript	AK033152	GenBank | ENA | DDBJ | MGI Sequence Detail	2708	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm41949:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8526	Chr1:128171994-128172062 (+)	-268 bp
Tssr8527	Chr1:128172079-128172090 (+)	-211 bp
Tssr8528	Chr1:128172169-128172180 (+)	-121 bp
Tssr8529	Chr1:128172321-128172330 (+)	30 bp
Tssr8530	Chr1:128172493-128172498 (+)	200 bp