Gm42023 Gene Detail

Summary

• Symbol
  Gm42023
• Name
  predicted gene, 42023

• Feature Type
  lncRNA gene
• IDs
  MGI:5624908
  NCBI Gene: 105246785
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:123175224-123184696 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624908	lncRNA gene	Chr5:123175224-123184696 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  34
• Chemically induced (other)
  1
• Gene trapped
  32
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm42023
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  105246785

Representative Sequences			Length	Strain/Species
genomic	105246785	NCBI Gene Model | MGI Sequence Detail	9473	C57BL/6J
transcript	XR_878758	RefSeq | MGI Sequence Detail	5674	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm42023:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48749	Chr5:123179134-123179149 (+)	3,918 bp