Gm42208 Gene Detail

Summary

• Symbol
  Gm42208
• Name
  predicted gene, 42208
• Synonyms
  Gm43204

• Feature Type
  lncRNA gene
• IDs
  MGI:5625093
  NCBI Gene: 105247026
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:36326476-36328809 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625093	lncRNA gene	Chr3:36326447-36333123 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006158	lincRNA gene	Chr3:34052769-34055102 (-)
A/J	MGP_AJ_G0006150	lincRNA gene	Chr3:33416670-33419003 (-)
AKR/J	MGP_AKRJ_G0006126	lincRNA gene	Chr3:34017078-34019411 (-)
BALB/cJ	MGP_BALBcJ_G0006126	lincRNA gene	Chr3:33177588-33179921 (-)
C3H/HeJ	MGP_C3HHeJ_G0006076	lincRNA gene	Chr3:34085746-34088079 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006288	lincRNA gene	Chr3:35707122-35709455 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005600	lincRNA gene	Chr3:31117322-31119660 (-)
CAST/EiJ	MGP_CASTEiJ_G0006011	lincRNA gene	Chr3:33939196-33941538 (-)
CBA/J	MGP_CBAJ_G0006061	lincRNA gene	Chr3:36673133-36675466 (-)
DBA/2J	MGP_DBA2J_G0006080	lincRNA gene	Chr3:32875318-32877651 (-)
FVB/NJ	MGP_FVBNJ_G0006104	lincRNA gene	Chr3:32334510-32336834 (-)
LP/J	MGP_LPJ_G0006162	lincRNA gene	Chr3:34828009-34830342 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006094	lincRNA gene	Chr3:39084442-39086775 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006292	lincRNA gene	Chr3:33879915-33882248 (-)
PWK/PhJ	MGP_PWKPhJ_G0005956	lincRNA gene	Chr3:32523496-32525820 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005865	lincRNA gene	Chr3:33250724-33253050 (-)
WSB/EiJ	MGP_WSBEiJ_G0006058	lincRNA gene	Chr3:33891993-33894327 (-)

Homology

• Gene Tree
  Gm42208
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000106140 (Evidence)
• NCBI Gene
  105247026

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106140	Ensembl Gene Model | MGI Sequence Detail	2334	C57BL/6J
transcript	ENSMUST00000198215	Ensembl | MGI Sequence Detail	670	Not Applicable

Other
Accession IDs

MGI:5663341

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;