Gm42375 Gene Detail

Summary

• Symbol
  Gm42375
• Name
  predicted gene, 42375
• Synonyms
  Cyp2a4as, Gm44963

• Feature Type
  lncRNA gene
• IDs
  MGI:5625260
  NCBI Gene: 105247243
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:26003846-26006637 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625260	lncRNA gene	Chr7:26003846-26006711 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0004401	antisense lncRNA gene	Chr7:24808107-24810977 (-)
AKR/J	MGP_AKRJ_G0004383	antisense lncRNA gene	Chr7:25426636-25429507 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0004336	antisense lncRNA gene	Chr7:25255354-25258226 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004536	antisense lncRNA gene	Chr7:26280561-26283427 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003993	antisense lncRNA gene	Chr7:26091693-26094521 (-)
CAST/EiJ	MGP_CASTEiJ_G0004296	antisense lncRNA gene	Chr7:19121375-19124245 (-)
CBA/J	MGP_CBAJ_G0004330	antisense lncRNA gene	Chr7:26656219-26659087 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0004362	antisense lncRNA gene	Chr7:24168354-24171224 (-)
LP/J	MGP_LPJ_G0004425	antisense lncRNA gene	Chr7:25690014-25692879 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004353	antisense lncRNA gene	Chr7:26950059-26952930 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0004249	antisense lncRNA gene	Chr7:19567377-19570246 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004190	antisense lncRNA gene	Chr7:16134704-16137580 (-)
WSB/EiJ	MGP_WSBEiJ_G0004335	antisense lncRNA gene	Chr7:25288849-25291714 (-)

Homology

• Gene Tree
  Gm42375
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm42375
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  722
• Tissues
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108431 (Evidence)
• NCBI Gene
  105247243

Representative Sequences			Length	Strain/Species
genomic	105247243	NCBI Gene Model | MGI Sequence Detail	2792	C57BL/6J
transcript	MT019824	GenBank | ENA | DDBJ | MGI Sequence Detail	1334	C57BL/6

Molecular
Reagents

• All nucleic 1

  Primer pair 1

Other
Accession IDs

MGI:5753539

References

• Summaries
  All 7

  Developmental Gene Expression 1

  Phenotypes 1
• Earliest
  J:216691 Li L, et al., Identification of cytochrome P450 enzymes critical for lung tumorigenesis by the tobacco-specific carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK): insights from a novel Cyp2abfgs-null mouse. Carcinogenesis. 2014 Nov;35(11):2584-91
• Latest
  J:296759 Nail AN, et al., Highly homologous mouse Cyp2a4 and Cyp2a5 genes are differentially expressed in the liver and both express long non-coding antisense RNAs. Gene. 2020 Sep 25;767:145162