Hcfc1r1-ps2 Pseudogene Detail

Summary

• Symbol
  Hcfc1r1-ps2
• Name
  host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 2

• Feature Type
  pseudogene
• IDs
  MGI:5645793
  NCBI Gene: 115488797
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:54095951-54096289 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5645793	pseudogene	Chr17:54095951-54096299 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011377	pseudogene	Chr17:55475792-55476137 (-)
A/J	MGP_AJ_G0011370	pseudogene	Chr17:53862743-53863089 (+)
AKR/J	MGP_AKRJ_G0011335	pseudogene	Chr17:54564698-54565043 (-)
BALB/cJ	MGP_BALBcJ_G0011351	pseudogene	Chr17:53686746-53687096 (+)
C3H/HeJ	MGP_C3HHeJ_G0011236	pseudogene	Chr17:55263145-55263490 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011419	pseudogene	Chr15:7676107-7676445 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011046	pseudogene	Chr17:55520957-55521294 (-)
CBA/J	MGP_CBAJ_G0011216	pseudogene	Chr17:59771929-59772274 (-)
DBA/2J	MGP_DBA2J_G0011268	pseudogene	Chr17:52693114-52693459 (-)
FVB/NJ	MGP_FVBNJ_G0011267	pseudogene	Chr17:52233139-52233511 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011262	pseudogene	Chr17:59073167-59073536 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011619	pseudogene	Chr17:54819468-54819837 (+)
PWK/PhJ	MGP_PWKPhJ_G0010914	pseudogene	Chr17:52032886-52033271 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010393	pseudogene	Chr11:18801991-18802319 (-)

Homology

• Gene Tree
  Hcfc1r1-ps2
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000104949 (Evidence)
• NCBI Gene
  115488797

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104949	Ensembl Gene Model | MGI Sequence Detail	339	C57BL/6J
transcript	ENSMUST00000199379	Ensembl | MGI Sequence Detail	339	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;