Gm42413 Gene Detail

Summary

• Symbol
  Gm42413
• Name
  predicted gene, 42413

• Feature Type
  lncRNA gene
• IDs
  MGI:5648986
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:45591731-45607480 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  640 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5648986	lncRNA gene	Chr5:45591731-45607480 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004076	antisense lncRNA gene	Chr5:44136043-44152933 (+)
A/J	MGP_AJ_G0004057	antisense lncRNA gene	Chr5:42602574-42618300 (+)
AKR/J	MGP_AKRJ_G0004035	antisense lncRNA gene	Chr5:44090716-44107271 (+)
BALB/cJ	MGP_BALBcJ_G0004043	antisense lncRNA gene	Chr5:43070855-43090973 (+)
C3H/HeJ	MGP_C3HHeJ_G0003989	antisense lncRNA gene	Chr5:44096753-44112551 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004192	antisense lncRNA gene	Chr5:46226433-46242995 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003670	antisense lncRNA gene	Chr5:39773311-39788642 (+)
CAST/EiJ	MGP_CASTEiJ_G0003953	antisense lncRNA gene	Chr5:43240196-43257293 (+)
CBA/J	MGP_CBAJ_G0003983	antisense lncRNA gene	Chr5:47486315-47505926 (+)
DBA/2J	MGP_DBA2J_G0003998	antisense lncRNA gene	Chr5:42690520-42706218 (+)
FVB/NJ	MGP_FVBNJ_G0004017	antisense lncRNA gene	Chr5:42118177-42133909 (+)
LP/J	MGP_LPJ_G0004078	antisense lncRNA gene	Chr5:44620067-44637334 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004006	antisense lncRNA gene	Chr5:48224024-48240797 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004187	antisense lncRNA gene	Chr5:43611111-43626791 (+)
PWK/PhJ	MGP_PWKPhJ_G0003906	antisense lncRNA gene	Chr5:41815802-41831642 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003851	antisense lncRNA gene	Chr5:43051364-43066555 (+)
WSB/EiJ	MGP_WSBEiJ_G0003988	antisense lncRNA gene	Chr5:43670435-43686210 (+)

Homology

• Gene Tree
  Gm42413
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm42413
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105255 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105255	Ensembl Gene Model | MGI Sequence Detail	15750	C57BL/6J
transcript	ENSMUST00000196216	Ensembl | MGI Sequence Detail	338	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17