Gm42425 Gene Detail

Summary

• Symbol
  Gm42425
• Name
  predicted gene 42425

• Feature Type
  lncRNA gene
• IDs
  MGI:5662562
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:124375787-124376498 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662562	lncRNA gene	Chr5:124375787-124376498 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004181	antisense lncRNA gene	Chr5:128034658-128035369 (+)
A/J	MGP_AJ_G0004160	antisense lncRNA gene	Chr5:122708241-122708952 (+)
AKR/J	MGP_AKRJ_G0004141	antisense lncRNA gene	Chr5:126658302-126659013 (+)
BALB/cJ	MGP_BALBcJ_G0004146	antisense lncRNA gene	Chr5:124044278-124044989 (+)
C3H/HeJ	MGP_C3HHeJ_G0004094	antisense lncRNA gene	Chr5:127272736-127273447 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004294	antisense lncRNA gene	Chr5:132997405-132998116 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003771	antisense lncRNA gene	Chr5:117240445-117241140 (+)
CAST/EiJ	MGP_CASTEiJ_G0004056	antisense lncRNA gene	Chr5:126387778-126388498 (+)
CBA/J	MGP_CBAJ_G0004088	antisense lncRNA gene	Chr5:138228625-138229336 (+)
DBA/2J	MGP_DBA2J_G0004104	antisense lncRNA gene	Chr5:122727685-122728396 (+)
FVB/NJ	MGP_FVBNJ_G0004120	antisense lncRNA gene	Chr5:121763977-121764688 (+)
LP/J	MGP_LPJ_G0004182	antisense lncRNA gene	Chr5:128582833-128583544 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004110	antisense lncRNA gene	Chr5:141803759-141804470 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004292	antisense lncRNA gene	Chr5:126278872-126279583 (+)
PWK/PhJ	MGP_PWKPhJ_G0004010	antisense lncRNA gene	Chr5:121541885-121542654 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003953	antisense lncRNA gene	Chr5:123928675-123929419 (+)
WSB/EiJ	MGP_WSBEiJ_G0004093	antisense lncRNA gene	Chr5:126948242-126948936 (+)

Homology

• Gene Tree
  Gm42425
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105759 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105759	Ensembl Gene Model | MGI Sequence Detail	712	C57BL/6J
transcript	ENSMUST00000197756	Ensembl | MGI Sequence Detail	565	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;