Gm42435 Gene Detail

Summary

• Symbol
  Gm42435
• Name
  predicted gene 42435

• Feature Type
  lncRNA gene
• IDs
  MGI:5662572
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:3548625-3550072 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662572	lncRNA gene	Chr5:3548625-3550072 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004026	antisense lncRNA gene	Chr5:303362-304809 (-)
A/J	MGP_AJ_G0004007	antisense lncRNA gene	Chr5:194427-195874 (-)
AKR/J	MGP_AKRJ_G0003985	antisense lncRNA gene	Chr5:182008-183455 (-)
BALB/cJ	MGP_BALBcJ_G0003993	antisense lncRNA gene	Chr5:427200-428647 (-)
C3H/HeJ	MGP_C3HHeJ_G0003940	antisense lncRNA gene	Chr5:361534-362981 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004142	antisense lncRNA gene	Chr5:568934-570381 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003623	antisense lncRNA gene	Chr5:226742-228176 (-)
CAST/EiJ	MGP_CASTEiJ_G0003903	antisense lncRNA gene	Chr5:369306-370777 (-)
CBA/J	MGP_CBAJ_G0003933	antisense lncRNA gene	Chr5:460258-461705 (-)
DBA/2J	MGP_DBA2J_G0003948	antisense lncRNA gene	Chr5:338038-339485 (-)
FVB/NJ	MGP_FVBNJ_G0003968	antisense lncRNA gene	Chr5:248354-249801 (-)
LP/J	MGP_LPJ_G0004029	antisense lncRNA gene	Chr5:349340-350787 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003956	antisense lncRNA gene	Chr5:268965-270435 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004136	antisense lncRNA gene	Chr5:312102-313549 (-)
PWK/PhJ	MGP_PWKPhJ_G0003857	antisense lncRNA gene	Chr5:318914-320391 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003802	antisense lncRNA gene	Chr5:592276-593730 (-)
WSB/EiJ	MGP_WSBEiJ_G0003939	antisense lncRNA gene	Chr5:338043-339490 (-)

Homology

• Gene Tree
  Gm42435
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105534 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105534	Ensembl Gene Model | MGI Sequence Detail	1448	C57BL/6J
transcript	ENSMUST00000196630	Ensembl | MGI Sequence Detail	1448	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42435:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1412	Chr5:3551699-3551710 (-)	-1,633 bp
Tssr49986	Chr5:3551654-3551664 (-)	-1,587 bp