Gm42452 Pseudogene Detail

Summary

• Symbol
  Gm42452
• Name
  predicted gene 42452

• Feature Type
  pseudogene
• IDs
  MGI:5662589
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:16002999-16004031 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662589	pseudogene	Chr5:16002999-16004031 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040389	pseudogene	Chr5:13105708-13106740 (+)
A/J	MGP_AJ_G0040369	pseudogene	Chr5:12728040-12729072 (+)
AKR/J	MGP_AKRJ_G0040301	pseudogene	Chr5:13357954-13358986 (+)
BALB/cJ	MGP_BALBcJ_G0040376	pseudogene	Chr5:13162338-13163370 (+)
C3H/HeJ	MGP_C3HHeJ_G0039994	pseudogene	Chr5:13281226-13282258 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040984	pseudogene	Chr5:14380492-14381524 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037355	pseudogene	Chr5:11114208-11115241 (+)
CAST/EiJ	MGP_CASTEiJ_G0039064	pseudogene	Chr5:12570326-12571358 (+)
CBA/J	MGP_CBAJ_G0039960	pseudogene	Chr5:14226204-14227236 (+)
DBA/2J	MGP_DBA2J_G0040169	pseudogene	Chr5:13035852-13036884 (+)
FVB/NJ	MGP_FVBNJ_G0040118	pseudogene	Chr5:12476183-12477215 (+)
LP/J	MGP_LPJ_G0040209	pseudogene	Chr5:13531520-13532552 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040111	pseudogene	Chr5:15187612-15188644 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041064	pseudogene	Chr5:12924465-12925497 (+)
PWK/PhJ	MGP_PWKPhJ_G0038749	pseudogene	Chr5:12097309-12098341 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038458	pseudogene	Chr5:12263767-12264799 (+)
WSB/EiJ	MGP_WSBEiJ_G0039306	pseudogene	Chr5:12920449-12921481 (+)

Homology

• Gene Tree
  Gm42452
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm42452
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106083 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106083	Ensembl Gene Model | MGI Sequence Detail	1033	C57BL/6J
transcript	ENSMUST00000199749	Ensembl | MGI Sequence Detail	617	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;