Gm42459 Pseudogene Detail

Summary

• Symbol
  Gm42459
• Name
  predicted gene 42459

• Feature Type
  pseudogene
• IDs
  MGI:5662596
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:50674815-50675556 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662596	pseudogene	Chr5:50674815-50675556 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013081	pseudogene	Chr5:49391077-49391818 (+)
A/J	MGP_AJ_G0013066	pseudogene	Chr5:47668259-47669000 (+)
AKR/J	MGP_AKRJ_G0013031	pseudogene	Chr5:49309312-49310053 (+)
BALB/cJ	MGP_BALBcJ_G0013044	pseudogene	Chr5:48156220-48156961 (+)
C3H/HeJ	MGP_C3HHeJ_G0012895	pseudogene	Chr5:49458901-49459642 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013404	pseudogene	Chr5:51533270-51534011 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011596	pseudogene	Chr5:44523638-44524421 (+)
CAST/EiJ	MGP_CASTEiJ_G0012627	pseudogene	Chr5:48428942-48429683 (+)
CBA/J	MGP_CBAJ_G0012863	pseudogene	Chr5:53073423-53074164 (+)
DBA/2J	MGP_DBA2J_G0012940	pseudogene	Chr5:47741280-47742021 (+)
FVB/NJ	MGP_FVBNJ_G0012947	pseudogene	Chr5:47086605-47087346 (+)
LP/J	MGP_LPJ_G0013015	pseudogene	Chr5:49862731-49863472 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012963	pseudogene	Chr5:54149661-54150402 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013406	pseudogene	Chr5:48829393-48830134 (+)
PWK/PhJ	MGP_PWKPhJ_G0012445	pseudogene	Chr5:46803266-46804007 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012246	pseudogene	Chr5:48195465-48196206 (+)
WSB/EiJ	MGP_WSBEiJ_G0012663	pseudogene	Chr5:48849787-48850528 (+)

Homology

• Gene Tree
  Gm42459
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm42459
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106345 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106345	Ensembl Gene Model | MGI Sequence Detail	742	C57BL/6J
transcript	ENSMUST00000199679	Ensembl | MGI Sequence Detail	742	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17