Gm42463 Gene Detail

Summary

• Symbol
  Gm42463
• Name
  predicted gene 42463

• Feature Type
  lncRNA gene
• IDs
  MGI:5662600
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:94320708-94325593 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662600	lncRNA gene	Chr3:94320708-94325593 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036950	sense intronic lncRNA gene	Chr3:94986752-94991637 (+)
A/J	MGP_AJ_G0036938	sense intronic lncRNA gene	Chr3:92096910-92101795 (+)
AKR/J	MGP_AKRJ_G0036885	sense intronic lncRNA gene	Chr3:94187359-94192244 (+)
BALB/cJ	MGP_BALBcJ_G0036929	sense intronic lncRNA gene	Chr3:91799313-91804198 (+)
C3H/HeJ	MGP_C3HHeJ_G0036615	sense intronic lncRNA gene	Chr3:94478201-94492305 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037441	sense intronic lncRNA gene	Chr3:98577394-98582279 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034498	sense intronic lncRNA gene	Chr3:88587085-88594182 (+)
CAST/EiJ	MGP_CASTEiJ_G0035804	sense intronic lncRNA gene	Chr3:93828759-93833641 (+)
CBA/J	MGP_CBAJ_G0036590	sense intronic lncRNA gene	Chr3:102068050-102073041 (+)
DBA/2J	MGP_DBA2J_G0036765	sense intronic lncRNA gene	Chr3:91356537-91361422 (+)
FVB/NJ	MGP_FVBNJ_G0036715	sense intronic lncRNA gene	Chr3:89461064-89465949 (+)
LP/J	MGP_LPJ_G0036813	sense intronic lncRNA gene	Chr3:96295193-96300078 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036723	sense intronic lncRNA gene	Chr3:108301592-108306477 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037559	sense intronic lncRNA gene	Chr3:93869484-93874369 (+)
PWK/PhJ	MGP_PWKPhJ_G0035497	sense intronic lncRNA gene	Chr3:91248823-91253710 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035309	sense intronic lncRNA gene	Chr3:92209087-92213976 (+)
WSB/EiJ	MGP_WSBEiJ_G0036004	sense intronic lncRNA gene	Chr3:94217435-94222320 (+)

Homology

• Gene Tree
  Gm42463
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106032 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106032	Ensembl Gene Model | MGI Sequence Detail	4886	C57BL/6J
transcript	ENSMUST00000198041	Ensembl | MGI Sequence Detail	4886	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;