Gm42478 Gene Detail

Summary

• Symbol
  Gm42478
• Name
  predicted gene 42478

• Feature Type
  unclassified gene
• IDs
  MGI:5662615
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:58087092-58088558 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662615	unclassified gene	Chr5:58087092-58088558 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001548	unclassified gene	Chr5:57236564-57238030 (+)
A/J	MGP_AJ_G0001529	unclassified gene	Chr5:55115512-55116978 (+)
AKR/J	MGP_AKRJ_G0001515	unclassified gene	Chr5:56908789-56910255 (+)
BALB/cJ	MGP_BALBcJ_G0001525	unclassified gene	Chr5:55720258-55721724 (+)
C3H/HeJ	MGP_C3HHeJ_G0001502	unclassified gene	Chr5:57202177-57203643 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001643	unclassified gene	Chr5:59544289-59545755 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001332	unclassified gene	Chr5:51914945-51916511 (+)
CAST/EiJ	MGP_CASTEiJ_G0001477	unclassified gene	Chr5:56206160-56207626 (+)
CBA/J	MGP_CBAJ_G0001493	unclassified gene	Chr5:61521344-61522810 (+)
DBA/2J	MGP_DBA2J_G0001498	unclassified gene	Chr5:55176105-55177571 (+)
FVB/NJ	MGP_FVBNJ_G0001505	unclassified gene	Chr5:54444695-54446161 (+)
LP/J	MGP_LPJ_G0001553	unclassified gene	Chr5:57619861-57621327 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001491	unclassified gene	Chr5:63260299-63261765 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001631	unclassified gene	Chr5:56522653-56524119 (+)
PWK/PhJ	MGP_PWKPhJ_G0001434	unclassified gene	Chr5:54218348-54219813 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001403	unclassified gene	Chr5:55967629-55969097 (+)
WSB/EiJ	MGP_WSBEiJ_G0001494	unclassified gene	Chr5:56671483-56672949 (+)

Homology

• Gene Tree
  Gm42478
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000106337 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106337	Ensembl Gene Model | MGI Sequence Detail	1467	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42478:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46326	Chr5:58085654-58085699 (+)	-1,415 bp