Tmem217rt Gene Detail

Summary

• Symbol
  Tmem217rt
• Name
  transmembrane 217, retrotransposed
• Synonyms
  Gm42517

• Feature Type
  protein coding gene
• IDs
  MGI:5662654
  NCBI Gene: 115490131
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:108513939-108515788 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662654	protein coding gene	Chr5:108513421-108515788 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006744	lincRNA gene	Chr5:110472784-110473258 (-)
A/J	MGP_AJ_G0006738	lincRNA gene	Chr5:106228161-106228635 (-)
AKR/J	MGP_AKRJ_G0006708	lincRNA gene	Chr5:109646222-109646696 (-)
BALB/cJ	MGP_BALBcJ_G0006713	lincRNA gene	Chr5:107369522-107369996 (-)
C3H/HeJ	MGP_C3HHeJ_G0006659	lincRNA gene	Chr5:110147511-110147985 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006878	lincRNA gene	Chr5:114975536-114976010 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006135	lincRNA gene	Chr5:101247607-101248081 (-)
CAST/EiJ	MGP_CASTEiJ_G0006582	lincRNA gene	Chr5:109035716-109036190 (-)
CBA/J	MGP_CBAJ_G0006640	lincRNA gene	Chr5:118882723-118883197 (-)
DBA/2J	MGP_DBA2J_G0006661	lincRNA gene	Chr5:106358929-106359403 (-)
FVB/NJ	MGP_FVBNJ_G0006685	lincRNA gene	Chr5:105086756-105087230 (-)
LP/J	MGP_LPJ_G0006745	lincRNA gene	Chr5:111057844-111058318 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006669	lincRNA gene	Chr5:123775694-123776168 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006881	lincRNA gene	Chr5:109215727-109216201 (-)
PWK/PhJ	MGP_PWKPhJ_G0006521	lincRNA gene	Chr5:105180727-105181201 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006427	lincRNA gene	Chr5:106730814-106731288 (-)
WSB/EiJ	MGP_WSBEiJ_G0006633	lincRNA gene	Chr5:109522687-109523161 (-)

Homology

• Human Ortholog
  TMEM271, transmembrane protein 271

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TMEM271, transmembrane protein 271
  
• Links
  HGNC:53639

  NCBI Gene ID: 112441426

  UniProt: A0A286YF58

  
  
• Chr Location
  4p16.3; chr4:573880-576295 (-)  GRCh38

---

• MGI Vertebrate Homology
  Tmem217rt stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TMEM271
• Gene Tree
  Tmem217rt
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Tmem217rt
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS89961.1

• Ensembl
  ENSMUSG00000105867 (Evidence)
• NCBI Gene
  115490131

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105867	Ensembl Gene Model | MGI Sequence Detail	1850	C57BL/6J
transcript	ENSMUST00000197216	Ensembl | MGI Sequence Detail	1850	Not Applicable
polypeptide	ENSMUSP00000152585	Ensembl | MGI Sequence Detail	374	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• GlyGen
  A0A1Y7VLQ2 1 site, 1 N-linked glycan (1 site)

Other
Accession IDs

MGI:7481998

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Tmem217rt:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52414	Chr5:108515761-108515788 (-)	13 bp