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Gm42543 Gene Detail
Summary
  • Symbol
    Gm42543
  • Name
    predicted gene 42543
  • Feature Type
    gene segment
  • IDs
    MGI:5662680
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:68857162-68857658 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    114 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5662680
 gene segment Chr6:68857162-68857658 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000139
 gene segment Chr6:69134168-69134644 (-)
A/J MGP_AJ_G0000131
 gene segment Chr6:66205568-66206064 (-)
AKR/J MGP_AKRJ_G0000133
 gene segment Chr6:68077455-68077931 (-)
BALB/cJ MGP_BALBcJ_G0000126
 gene segment Chr6:66508580-66509813 (-)
C3H/HeJ MGP_C3HHeJ_G0000125
 gene segment Chr6:115992833-115993501 (+)
C57BL/6NJ MGP_C57BL6NJ_G0000178
 gene segment Chr6:70814672-70815158 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000070
 gene segment Chr6:65703610-65704079 (-)
CAST/EiJ MGP_CASTEiJ_G0000136
 gene segment Chr6:68462651-68463127 (-)
CBA/J MGP_CBAJ_G0000131
 gene segment Chr6:73588025-73588504 (-)
DBA/2J MGP_DBA2J_G0000126
 gene segment Chr6:65801923-65802508 (-)
FVB/NJ MGP_FVBNJ_G0000123
 gene segment Chr6:65246972-65247450 (-)
LP/J MGP_LPJ_G0000142
 gene segment Chr6:68944700-68945210 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000135
 gene segment Chr6:77339306-77339782 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000163
 gene segment Chr6:68252560-68253403 (-)
PWK/PhJ MGP_PWKPhJ_G0000116
 gene segment Chr6:64775900-64776380 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000094
 gene segment Chr6:67541347-67541822 (-)
WSB/EiJ MGP_WSBEiJ_G0000134
 gene segment Chr6:68518496-68518971 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000105630 Ensembl Gene Model | MGI Sequence Detail 497 C57BL/6J ±  kb
transcript ENSMUST00000198756 Ensembl | MGI Sequence Detail 353 Not Applicable  
polypeptide ENSMUSP00000142898 Ensembl | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR050150 Immunoglobulin Variable Light Chain
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 4
    Gene Ontology 1
  • Earliest
    J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
  • Latest
    J:161428 Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas, Annotation inferences using phylogenetic trees. 2010;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory