Gm42556 Gene Detail

Summary

• Symbol
  Gm42556
• Name
  predicted gene 42556

• Feature Type
  lncRNA gene
• IDs
  MGI:5662693
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:150207460-150222906 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  634 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662693	lncRNA gene	Chr5:150207460-150222906 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004227	antisense lncRNA gene	Chr5:156212780-156228093 (-)
A/J	MGP_AJ_G0004205	antisense lncRNA gene	Chr5:149515374-149530666 (-)
AKR/J	MGP_AKRJ_G0004186	antisense lncRNA gene	Chr5:154131647-154147001 (-)
BALB/cJ	MGP_BALBcJ_G0004192	antisense lncRNA gene	Chr5:150778291-150793845 (-)
C3H/HeJ	MGP_C3HHeJ_G0004140	antisense lncRNA gene	Chr5:155124847-155142470 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004341	antisense lncRNA gene	Chr5:161905161-161921451 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003814	antisense lncRNA gene	Chr5:143853770-143869590 (-)
CAST/EiJ	MGP_CASTEiJ_G0004102	antisense lncRNA gene	Chr5:154772794-154790164 (-)
CBA/J	MGP_CBAJ_G0004134	antisense lncRNA gene	Chr5:168729919-168747474 (-)
DBA/2J	MGP_DBA2J_G0004150	antisense lncRNA gene	Chr5:149170237-149185799 (-)
FVB/NJ	MGP_FVBNJ_G0004166	antisense lncRNA gene	Chr5:148416299-148431623 (-)
LP/J	MGP_LPJ_G0004228	antisense lncRNA gene	Chr5:156874910-156890204 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004156	antisense lncRNA gene	Chr5:170790425-170806858 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004338	antisense lncRNA gene	Chr5:154077558-154093498 (-)
PWK/PhJ	MGP_PWKPhJ_G0004055	antisense lncRNA gene	Chr5:148333436-148349192 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003999	antisense lncRNA gene	Chr5:151383879-151400333 (-)
WSB/EiJ	MGP_WSBEiJ_G0004138	antisense lncRNA gene	Chr5:154891641-154907702 (-)

Homology

• Gene Tree
  Gm42556
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106719 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106719	Ensembl Gene Model | MGI Sequence Detail	15447	C57BL/6J
transcript	ENSMUST00000201397	Ensembl | MGI Sequence Detail	607	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;