Gm42558 Gene Detail

Summary

• Symbol
  Gm42558
• Name
  predicted gene 42558

• Feature Type
  lncRNA gene
• IDs
  MGI:5662695
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:149945944-149946208 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662695	lncRNA gene	Chr5:149945944-149946208 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037053	sense intronic lncRNA gene	Chr5:155927220-155927484 (+)
A/J	MGP_AJ_G0037041	sense intronic lncRNA gene	Chr5:149249087-149249351 (+)
AKR/J	MGP_AKRJ_G0036989	sense intronic lncRNA gene	Chr5:153854974-153855238 (+)
BALB/cJ	MGP_BALBcJ_G0037032	sense intronic lncRNA gene	Chr5:150505236-150505500 (+)
C3H/HeJ	MGP_C3HHeJ_G0036719	sense intronic lncRNA gene	Chr5:154844655-154844919 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037544	sense intronic lncRNA gene	Chr5:161619605-161619869 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034591	sense intronic lncRNA gene	Chr5:143593603-143593867 (+)
CAST/EiJ	MGP_CASTEiJ_G0035907	sense intronic lncRNA gene	Chr5:154481989-154482253 (+)
CBA/J	MGP_CBAJ_G0036694	sense intronic lncRNA gene	Chr5:168435022-168435286 (+)
DBA/2J	MGP_DBA2J_G0036869	sense intronic lncRNA gene	Chr5:148895216-148895480 (+)
FVB/NJ	MGP_FVBNJ_G0036819	sense intronic lncRNA gene	Chr5:148146932-148147196 (+)
LP/J	MGP_LPJ_G0036916	sense intronic lncRNA gene	Chr5:156597396-156597660 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036826	sense intronic lncRNA gene	Chr5:170506121-170506385 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037662	sense intronic lncRNA gene	Chr5:153801174-153801438 (+)
PWK/PhJ	MGP_PWKPhJ_G0035599	sense intronic lncRNA gene	Chr5:148068616-148068880 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035408	sense intronic lncRNA gene	Chr5:151103265-151103529 (+)
WSB/EiJ	MGP_WSBEiJ_G0036107	sense intronic lncRNA gene	Chr5:154609586-154609850 (+)

Homology

• Gene Tree
  Gm42558
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107360 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107360	Ensembl Gene Model | MGI Sequence Detail	265	C57BL/6J
transcript	ENSMUST00000200982	Ensembl | MGI Sequence Detail	265	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;