Gm42571 Gene Detail

Summary

• Symbol
  Gm42571
• Name
  predicted gene 42571

• Feature Type
  unclassified gene
• IDs
  MGI:5662708
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:73345297-73347760 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662708	unclassified gene	Chr5:73345297-73347760 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0001621	unclassified gene	Chr5:73174750-73177211 (-)
A/J	MGP_AJ_G0001602	unclassified gene	Chr5:70436545-70439006 (-)
AKR/J	MGP_AKRJ_G0001587	unclassified gene	Chr5:72717341-72719802 (-)
BALB/cJ	MGP_BALBcJ_G0001598	unclassified gene	Chr5:71154470-71156931 (-)
C3H/HeJ	MGP_C3HHeJ_G0001575	unclassified gene	Chr5:73120171-73122645 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0001715	unclassified gene	Chr5:76186820-76189283 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0001548	unclassified gene	Chr5:72173181-72177701 (-)
CBA/J	MGP_CBAJ_G0001566	unclassified gene	Chr5:78665786-78668260 (-)
DBA/2J	MGP_DBA2J_G0001569	unclassified gene	Chr5:70515969-70518443 (-)
FVB/NJ	MGP_FVBNJ_G0001578	unclassified gene	Chr5:69653903-69656364 (-)
LP/J	MGP_LPJ_G0001625	unclassified gene	Chr5:73615831-73618292 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001560	unclassified gene	Chr5:81971131-81973605 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001705	unclassified gene	Chr5:72265525-72267986 (-)
PWK/PhJ	MGP_PWKPhJ_G0001506	unclassified gene	Chr5:69474890-69479763 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0001474	unclassified gene	Chr5:71608457-71613065 (-)
WSB/EiJ	MGP_WSBEiJ_G0001566	unclassified gene	Chr5:72551647-72554104 (-)

Homology

• Gene Tree
  Gm42571
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000107109 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107109	Ensembl Gene Model | MGI Sequence Detail	2464	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42571:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51356	Chr5:73349291-73349304 (-)	-1,538 bp
Tssr51355	Chr5:73349270-73349275 (-)	-1,513 bp
Tssr51354	Chr5:73349191-73349265 (-)	-1,468 bp
Tssr51353	Chr5:73349179-73349190 (-)	-1,425 bp